HL_5LZX_075

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5LZX|1|5|G|4694, 5LZX|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_075 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0937

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LZX|1|5|C|4688
5LZX|1|5|U|4689
5LZX|1|5|G|4690
5LZX|1|5|A|4691
5LZX|1|5|A|4692
5LZX|1|5|C|4693
5LZX|1|5|G|4694
5LZX|1|5|C|4695
5LZX|1|5|C|4696
5LZX|1|5|U|4697
5LZX|1|5|C|4698
5LZX|1|5|U|4699
5LZX|1|5|A|4700
5LZX|1|5|A|4701
5LZX|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40