HL_5LZX_087

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

5LZX|1|9|G|74, 5LZX|1|9|G|75, 5LZX|1|9|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_087 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2988

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5LZX|1|9|C|69
5LZX|1|9|G|70
5LZX|1|9|G|71
5LZX|1|9|C|72
5LZX|1|9|C|73
5LZX|1|9|G|74
5LZX|1|9|G|75
5LZX|1|9|U|76
5LZX|1|9|A|77
5LZX|1|9|C|78
5LZX|1|9|A|79
5LZX|1|9|G|80

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

eL24