HL_5LZX_092

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5LZX|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_092 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3788

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5LZX|1|9|G|377
5LZX|1|9|U|378
5LZX|1|9|C|379
5LZX|1|9|G|380
5LZX|1|9|C|381
5LZX|1|9|C|382
5LZX|1|9|G|383
5LZX|1|9|U|384
5LZX|1|9|G|385
5LZX|1|9|C|386
5LZX|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17