HL_5LZZ_064
3D structure
- PDB id
- 5LZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZZ_064 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.1134
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5LZZ|1|5|C|4270
5LZZ|1|5|A|4271
5LZZ|1|5|G|4272
5LZZ|1|5|A|4273
5LZZ|1|5|A|4274
5LZZ|1|5|G|4275
5LZZ|1|5|G|4276
5LZZ|1|5|G|4277
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain T
- eL21
- Chain o
- eL42
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