3D structure

PDB id
5LZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.47 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
5LZZ|1|5|G|4694, 5LZZ|1|5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZZ_074 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.0904
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

5LZZ|1|5|C|4688
5LZZ|1|5|U|4689
5LZZ|1|5|G|4690
5LZZ|1|5|A|4691
5LZZ|1|5|A|4692
5LZZ|1|5|C|4693
5LZZ|1|5|G|4694
5LZZ|1|5|C|4695
5LZZ|1|5|C|4696
5LZZ|1|5|U|4697
5LZZ|1|5|C|4698
5LZZ|1|5|U|4699
5LZZ|1|5|A|4700
5LZZ|1|5|A|4701
5LZZ|1|5|G|4702

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
uL6
Chain O
uL13
Chain m
eL40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3358 s