HL_5LZZ_122

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGGCA

Length

5 nucleotides

Bulged bases

5LZZ|1|5|G|3597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_122 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3708

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5LZZ|1|5|U|2900
5LZZ|1|5|G|2901
5LZZ|1|5|G|3597
5LZZ|1|5|C|3598
5LZZ|1|5|A|3599

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

uS17

Chain R

eL19