HL_5M0J_001

3D structure

PDB id

5M0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the cytoplasmic complex with She2p, She3p, and the ASH1 mRNA E3-localization element

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

5M0J|1|E|C|12
5M0J|1|E|G|13
5M0J|1|E|A|14
5M0J|1|E|A|15
5M0J|1|E|A|16
5M0J|1|E|G|17

Current chains

Chain E

ASH1 E3 (28 nt-loop)

Nearby chains

Chain B

SWI5-dependent HO expression protein 2,SWI5-dependent HO expression protein 3