HL_5M3J_001

3D structure

PDB id

5M3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

5M3J|1|V|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M3J_001 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.0612

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

5M3J|1|V|U|3
5M3J|1|V|A|4
5M3J|1|V|G|5
5M3J|1|V|U|6
5M3J|1|V|A|7
5M3J|1|V|A|8

Current chains

Chain V

RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit