HL_5MDV_036

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5MDV|1|1|A|1453, 5MDV|1|1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDV_036 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.098

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5MDV|1|1|C|1451
5MDV|1|1|G|1452
5MDV|1|1|A|1453
5MDV|1|1|C|1454
5MDV|1|1|G|1455
5MDV|1|1|G|1456
5MDV|1|1|U|1457
5MDV|1|1|U|1458
5MDV|1|1|G|1459

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17