HL_5MDW_001
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- 5MDW|1|1|G|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDW_001 not in the Motif Atlas
- Homologous match to HL_5J7L_134
- Geometric discrepancy: 0.3365
- The information below is about HL_5J7L_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35677.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5MDW|1|1|U|59
5MDW|1|1|G|60
5MDW|1|1|C|61
5MDW|1|1|U|62
5MDW|1|1|A|63
5MDW|1|1|A|64
5MDW|1|1|U|65
5MDW|1|1|C|66
5MDW|1|1|U|67
5MDW|1|1|G|68
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
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