HL_5MDW_078

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5MDW|1|2|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_078 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1286

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5MDW|1|2|C|342
5MDW|1|2|U|343
5MDW|1|2|A|344
5MDW|1|2|C|345
5MDW|1|2|G|346
5MDW|1|2|G|347

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19