HL_5MDW_099

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5MDW|1|2|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_099 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.128

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5MDW|1|2|C|1449
5MDW|1|2|U|1450
5MDW|1|2|U|1451
5MDW|1|2|C|1452
5MDW|1|2|G|1453
5MDW|1|2|G|1454

Current chains

Chain 2

16S ribosomal RNA

Nearby chains