HL_5MDW_109

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

5MDW|1|1|U|2797, 5MDW|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_109 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2657

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5MDW|1|1|C|2795
5MDW|1|1|U|2796
5MDW|1|1|U|2797
5MDW|1|1|U|2798
5MDW|1|1|A|2799
5MDW|1|1|A|2800
5MDW|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains