HL_5MDW_111

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_111 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.112

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MDW|1|2|C|522
5MDW|1|2|A|523
5MDW|1|2|G|524
5MDW|1|2|C|525
5MDW|1|2|C|526
5MDW|1|2|7MG|527

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain q

30S ribosomal protein S12