HL_5MDW_112
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 5MDW|1|3|C|35, 5MDW|1|3|C|36, 5MDW|1|3|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDW_112 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1068
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5MDW|1|3|A|34
5MDW|1|3|C|35
5MDW|1|3|C|36
5MDW|1|3|C|37
5MDW|1|3|C|38
5MDW|1|3|A|39
5MDW|1|3|U|40
5MDW|1|3|G|41
5MDW|1|3|C|42
5MDW|1|3|C|43
5MDW|1|3|G|44
5MDW|1|3|A|45
5MDW|1|3|A|46
5MDW|1|3|C|47
5MDW|1|3|U|48
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain a
- 50S ribosomal protein L31
Coloring options: