HL_5MDY_040

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

5MDY|1|1|A|1614, 5MDY|1|1|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_040 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0807

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5MDY|1|1|C|1612
5MDY|1|1|G|1613
5MDY|1|1|A|1614
5MDY|1|1|C|1615
5MDY|1|1|A|1616
5MDY|1|1|C|1617
5MDY|1|1|6MZ|1618
5MDY|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34