3D structure

PDB id
5MDY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.35 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
5MDY|1|1|G|2751, 5MDY|1|1|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MDY_066 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1163
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53269.1
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
11

Unit IDs

5MDY|1|1|C|2745
5MDY|1|1|U|2746
5MDY|1|1|G|2747
5MDY|1|1|A|2748
5MDY|1|1|A|2749
5MDY|1|1|A|2750
5MDY|1|1|G|2751
5MDY|1|1|C|2752
5MDY|1|1|A|2753
5MDY|1|1|U|2754
5MDY|1|1|C|2755
5MDY|1|1|U|2756
5MDY|1|1|A|2757
5MDY|1|1|A|2758
5MDY|1|1|G|2759

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L6
Chain J
50S ribosomal protein L13
Chain f
50S ribosomal protein L36

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