HL_5MDY_103

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

5MDY|1|5|U|17, 5MDY|1|5|G|18, 5MDY|1|5|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_103 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1728

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDY|1|5|C|12
5MDY|1|5|A|13
5MDY|1|5|G|14
5MDY|1|5|C|15
5MDY|1|5|C|16
5MDY|1|5|U|17
5MDY|1|5|G|18
5MDY|1|5|G|19
5MDY|1|5|H2U|20
5MDY|1|5|A|21
5MDY|1|5|G|22

Current chains

Chain 5

fMet-NH-tRNA(fMet)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain E

50S ribosomal protein L5