HL_5MDY_106

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUCAACCCGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDY|1|1|G|883
5MDY|1|1|U|884
5MDY|1|1|C|885
5MDY|1|1|A|886
5MDY|1|1|A|887
5MDY|1|1|C|888
5MDY|1|1|C|889
5MDY|1|1|C|890
5MDY|1|1|G|891
5MDY|1|1|A|892
5MDY|1|1|C|893

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 2

Chain r

30S ribosomal protein S13