HL_5MDY_110

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGACCUUCGGGC

Length

12 nucleotides

Bulged bases

5MDY|1|2|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDY|1|2|G|203
5MDY|1|2|G|204
5MDY|1|2|A|205
5MDY|1|2|C|206
5MDY|1|2|C|207
5MDY|1|2|U|208
5MDY|1|2|U|209
5MDY|1|2|C|210
5MDY|1|2|G|211
5MDY|1|2|G|212
5MDY|1|2|G|213
5MDY|1|2|C|214

Current chains

Chain 2

16S ribosomal RNA

Nearby chains