HL_5MDZ_060

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1124

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MDZ|1|1|A|2471
5MDZ|1|1|G|2472
5MDZ|1|1|U|2473
5MDZ|1|1|U|2474
5MDZ|1|1|C|2475
5MDZ|1|1|A|2476
5MDZ|1|1|U|2477
5MDZ|1|1|A|2478
5MDZ|1|1|U|2479

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36