HL_5MDZ_066
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5MDZ|1|1|G|2751, 5MDZ|1|1|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDZ_066 not in the Motif Atlas
- Homologous match to HL_4WF9_062
- Geometric discrepancy: 0.1115
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.1
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
5MDZ|1|1|C|2745
5MDZ|1|1|U|2746
5MDZ|1|1|G|2747
5MDZ|1|1|A|2748
5MDZ|1|1|A|2749
5MDZ|1|1|A|2750
5MDZ|1|1|G|2751
5MDZ|1|1|C|2752
5MDZ|1|1|A|2753
5MDZ|1|1|U|2754
5MDZ|1|1|C|2755
5MDZ|1|1|U|2756
5MDZ|1|1|A|2757
5MDZ|1|1|A|2758
5MDZ|1|1|G|2759
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
- Chain f
- 50S ribosomal protein L36
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