HL_5MDZ_081

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5MDZ|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1247

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5MDZ|1|2|G|462
5MDZ|1|2|U|463
5MDZ|1|2|U|464
5MDZ|1|2|A|465
5MDZ|1|2|A|466
5MDZ|1|2|U|467
5MDZ|1|2|A|468
5MDZ|1|2|C|469
5MDZ|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains