HL_5MDZ_106

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAACCCGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDZ|1|1|G|883
5MDZ|1|1|U|884
5MDZ|1|1|C|885
5MDZ|1|1|A|886
5MDZ|1|1|A|887
5MDZ|1|1|C|888
5MDZ|1|1|C|889
5MDZ|1|1|C|890
5MDZ|1|1|G|891
5MDZ|1|1|A|892
5MDZ|1|1|C|893

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13