HL_5ME0_012

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5ME0|1|A|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ME0_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1329

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ME0|1|A|G|462
5ME0|1|A|U|463
5ME0|1|A|U|464
5ME0|1|A|A|465
5ME0|1|A|A|466
5ME0|1|A|U|467
5ME0|1|A|A|468
5ME0|1|A|C|469
5ME0|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains