HL_5ME0_038

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACC

Length

37 nucleotides

Bulged bases

5ME0|1|A|A|1016, 5ME0|1|A|U|1017, 5ME0|1|A|U|1030, 5ME0|1|A|C|1031

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ME0|1|A|G|1002
5ME0|1|A|G|1003
5ME0|1|A|A|1004
5ME0|1|A|A|1005
5ME0|1|A|G|1006
5ME0|1|A|U|1007
5ME0|1|A|U|1008
5ME0|1|A|U|1009
5ME0|1|A|U|1010
5ME0|1|A|C|1011
5ME0|1|A|A|1012
5ME0|1|A|G|1013
5ME0|1|A|A|1014
5ME0|1|A|G|1015
5ME0|1|A|A|1016
5ME0|1|A|U|1017
5ME0|1|A|G|1018
5ME0|1|A|A|1019
5ME0|1|A|G|1020
5ME0|1|A|A|1021
5ME0|1|A|A|1022
5ME0|1|A|U|1023
5ME0|1|A|G|1024
5ME0|1|A|U|1025
5ME0|1|A|G|1026
5ME0|1|A|C|1027
5ME0|1|A|C|1028
5ME0|1|A|U|1029
5ME0|1|A|U|1030
5ME0|1|A|C|1031
5ME0|1|A|G|1032
5ME0|1|A|G|1033
5ME0|1|A|G|1034
5ME0|1|A|A|1035
5ME0|1|A|A|1036
5ME0|1|A|C|1037
5ME0|1|A|C|1038

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19