HL_5MGP_021

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

5MGP|1|A|C|747, 5MGP|1|A|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.0908

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5MGP|1|A|U|744
5MGP|1|A|G|745
5MGP|1|A|U|746
5MGP|1|A|C|747
5MGP|1|A|G|748
5MGP|1|A|A|749
5MGP|1|A|A|750
5MGP|1|A|A|751
5MGP|1|A|A|752
5MGP|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 2

50S ribosomal protein L34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22