3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUCGAAAAA
Length
10 nucleotides
Bulged bases
5MGP|1|A|C|747, 5MGP|1|A|A|751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MGP_021 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.0908
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

5MGP|1|A|U|744
5MGP|1|A|G|745
5MGP|1|A|U|746
5MGP|1|A|C|747
5MGP|1|A|G|748
5MGP|1|A|A|749
5MGP|1|A|A|750
5MGP|1|A|A|751
5MGP|1|A|A|752
5MGP|1|A|A|753

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain 2
50S ribosomal protein L34
Chain D
50S ribosomal protein L3
Chain S
50S ribosomal protein L22

Coloring options:


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