HL_5MGP_071
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 5MGP|1|a|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MGP_071 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0829
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5MGP|1|a|U|12
5MGP|1|a|U|13
5MGP|1|a|U|14
5MGP|1|a|G|15
5MGP|1|a|A|16
5MGP|1|a|U|17
5MGP|1|a|C|18
5MGP|1|a|A|19
5MGP|1|a|U|20
5MGP|1|a|G|21
5MGP|1|a|G|22
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S5
- Chain l
- 30S ribosomal protein S12
- Chain w
- Alternative ribosome-rescue factor A
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