HL_5MGP_082

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5MGP|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1748

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5MGP|1|a|G|462
5MGP|1|a|U|463
5MGP|1|a|U|464
5MGP|1|a|A|465
5MGP|1|a|A|466
5MGP|1|a|U|467
5MGP|1|a|A|468
5MGP|1|a|C|469
5MGP|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains