HL_5MGP_106

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5MGP|1|A|U|1729, 5MGP|1|A|C|1730, 5MGP|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_106 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.2405

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5MGP|1|A|C|1727
5MGP|1|A|C|1728
5MGP|1|A|U|1729
5MGP|1|A|C|1730
5MGP|1|A|G|1731
5MGP|1|A|C|1732
5MGP|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains