HL_5MLC_004

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_004 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.195

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5MLC|1|A|U|129
5MLC|1|A|U|130
5MLC|1|A|C|131
5MLC|1|A|G|132

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain V

50S ribosomal protein L23, chloroplastic

Chain Z

50S ribosomal protein L29, chloroplastic