HL_5MLC_006

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5MLC|1|A|A|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1106

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MLC|1|A|G|179
5MLC|1|A|A|180
5MLC|1|A|A|181
5MLC|1|A|A|182
5MLC|1|A|C|183
5MLC|1|A|A|184
5MLC|1|A|U|185
5MLC|1|A|C|186

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain N

50S ribosomal protein L15, chloroplastic

Chain Y

50S ribosomal protein L28, chloroplastic