HL_5MLC_013

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5MLC|1|A|G|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_013 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1065

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5MLC|1|A|G|422
5MLC|1|A|G|423
5MLC|1|A|A|424
5MLC|1|A|C|425
5MLC|1|A|C|426
5MLC|1|A|A|427
5MLC|1|A|C|428
5MLC|1|A|C|429

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain N

50S ribosomal protein L15, chloroplastic