HL_5MLC_015

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_015 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.3742

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MLC|1|A|C|499
5MLC|1|A|C|500
5MLC|1|A|A|501
5MLC|1|A|U|502
5MLC|1|A|C|503
5MLC|1|A|G|504

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain U

50S ribosomal protein L22, chloroplastic

Chain W

50S ribosomal protein L24, chloroplastic