HL_5MLC_023

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

5MLC|1|A|A|792, 5MLC|1|A|U|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_023 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3071

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

5MLC|1|A|U|790
5MLC|1|A|G|791
5MLC|1|A|A|792
5MLC|1|A|A|793
5MLC|1|A|A|794
5MLC|1|A|U|795
5MLC|1|A|G|796

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain D

50S ribosomal protein L2, chloroplastic