HL_5MLC_027

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

5MLC|1|A|U|986, 5MLC|1|A|G|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_027 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1103

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MLC|1|A|G|983
5MLC|1|A|G|984
5MLC|1|A|A|985
5MLC|1|A|U|986
5MLC|1|A|A|987
5MLC|1|A|A|988
5MLC|1|A|G|989
5MLC|1|A|C|990

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 8

PSRP6, chloroplastic

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L16, chloroplastic