HL_5MLC_039

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

5MLC|1|A|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_039 not in the Motif Atlas

Homologous match to HL_7A0S_039

Geometric discrepancy: 0.1187

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5MLC|1|A|C|1599
5MLC|1|A|A|1600
5MLC|1|A|G|1601
5MLC|1|A|G|1602

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain D

50S ribosomal protein L2, chloroplastic