HL_5MLC_040

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5MLC|1|A|A|1650, 5MLC|1|A|A|1652, 5MLC|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_040 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1501

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5MLC|1|A|C|1648
5MLC|1|A|G|1649
5MLC|1|A|A|1650
5MLC|1|A|C|1651
5MLC|1|A|A|1652
5MLC|1|A|C|1653
5MLC|1|A|A|1654
5MLC|1|A|G|1655

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain U

50S ribosomal protein L22, chloroplastic