HL_5MLC_043

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCACAAAG

Length

9 nucleotides

Bulged bases

5MLC|1|A|C|1750, 5MLC|1|A|A|1751, 5MLC|1|A|C|1752, 5MLC|1|A|A|1753, 5MLC|1|A|A|1754

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_043 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.3815

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MLC|1|A|C|1748
5MLC|1|A|U|1749
5MLC|1|A|C|1750
5MLC|1|A|A|1751
5MLC|1|A|C|1752
5MLC|1|A|A|1753
5MLC|1|A|A|1754
5MLC|1|A|A|1755
5MLC|1|A|G|1756

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains