HL_5MLC_050

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCCGGG

Length

8 nucleotides

Bulged bases

5MLC|1|A|C|2159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_050 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.1874

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5MLC|1|A|C|2156
5MLC|1|A|U|2157
5MLC|1|A|U|2158
5MLC|1|A|C|2159
5MLC|1|A|C|2160
5MLC|1|A|G|2161
5MLC|1|A|G|2162
5MLC|1|A|G|2163

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains