HL_5MLC_052

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGGGGCGU

Length

9 nucleotides

Bulged bases

5MLC|1|A|G|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_052 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1053

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5MLC|1|A|A|2265
5MLC|1|A|U|2266
5MLC|1|A|G|2267
5MLC|1|A|G|2268
5MLC|1|A|G|2269
5MLC|1|A|G|2270
5MLC|1|A|C|2271
5MLC|1|A|G|2272
5MLC|1|A|U|2273

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 9

Ribosome-recycling factor, chloroplastic

Chain O

50S ribosomal protein L16, chloroplastic

Chain X

50S ribosomal protein L27, chloroplastic