HL_5MLC_058

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

5MLC|1|A|A|2423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1076

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5MLC|1|A|C|2421
5MLC|1|A|G|2422
5MLC|1|A|A|2423
5MLC|1|A|G|2424
5MLC|1|A|U|2425
5MLC|1|A|G|2426
5MLC|1|A|G|2427
5MLC|1|A|A|2428
5MLC|1|A|A|2429
5MLC|1|A|G|2430

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 3

50S ribosomal protein L33, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic