HL_5MLC_060

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGUAGUAUG

Length

10 nucleotides

Bulged bases

5MLC|1|A|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_060 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3546

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

5MLC|1|A|C|2544
5MLC|1|A|U|2545
5MLC|1|A|G|2546
5MLC|1|A|U|2547
5MLC|1|A|A|2548
5MLC|1|A|G|2549
5MLC|1|A|U|2550
5MLC|1|A|A|2551
5MLC|1|A|U|2552
5MLC|1|A|G|2553

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain H

50S ribosomal protein L6, chloroplastic