HL_5MLC_064

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_064 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.1776

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5MLC|1|A|U|2718
5MLC|1|A|G|2719
5MLC|1|A|C|2720
5MLC|1|A|C|2721
5MLC|1|A|C|2722
5MLC|1|A|A|2723

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain C

4.8S ribosomal RNA, chloroplastic

Chain P

50S ribosomal protein L17, chloroplastic