HL_5MQF_002

3D structure

PDB id

5MQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

5MQF|1|2|C|164, 5MQF|1|2|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MQF|1|2|G|158
5MQF|1|2|U|159
5MQF|1|2|A|160
5MQF|1|2|U|161
5MQF|1|2|U|162
5MQF|1|2|G|163
5MQF|1|2|C|164
5MQF|1|2|A|165
5MQF|1|2|G|166
5MQF|1|2|U|167
5MQF|1|2|A|168
5MQF|1|2|C|169
5MQF|1|2|C|170
5MQF|1|2|U|171
5MQF|1|2|C|172

Current chains

Chain 2

Human gene for small nuclear RNA U2 (snRNA U2)

Nearby chains

Chain X

U2 small nuclear ribonucleoprotein B''

Chain l

Small nuclear ribonucleoprotein Sm D3