HL_5MQF_003
3D structure
- PDB id
- 5MQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- UCGCCUUUUACUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MQF|1|5|U|35
5MQF|1|5|C|36
5MQF|1|5|G|37
5MQF|1|5|C|38
5MQF|1|5|C|39
5MQF|1|5|U|40
5MQF|1|5|U|41
5MQF|1|5|U|42
5MQF|1|5|U|43
5MQF|1|5|A|44
5MQF|1|5|C|45
5MQF|1|5|U|46
5MQF|1|5|A|47
Current chains
- Chain 5
- Homo sapiens U5 A small nuclear RNA
Nearby chains
- Chain 6
- U6 spliceosomal RNA; U6 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Pleiotropic regulator 1
- Chain R
- Spliceosome-associated protein CWC15 homolog
- Chain S
- Serine/arginine repetitive matrix protein 2
- Chain Z
- MINX pre-mRNA (intron)
Coloring options: