HL_5MQF_006
3D structure
- PDB id
- 5MQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 5MQF|1|6|C|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MQF_006 not in the Motif Atlas
- Homologous match to HL_5VSU_001
- Geometric discrepancy: 0.5999
- The information below is about HL_5VSU_001
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 428
Unit IDs
5MQF|1|6|U|64
5MQF|1|6|G|65
5MQF|1|6|C|66
5MQF|1|6|G|67
5MQF|1|6|C|68
5MQF|1|6|A|69
5MQF|1|6|A|70
Current chains
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Pleiotropic regulator 1
- Chain R
- Spliceosome-associated protein CWC15 homolog
- Chain Z
- MINX pre-mRNA (intron)
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