HL_5MRE_013

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAAUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_013 not in the Motif Atlas

Geometric match to HL_8DP3_003

Geometric discrepancy: 0.3635

The information below is about HL_8DP3_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MRE|1|A|C|505
5MRE|1|A|A|506
5MRE|1|A|A|507
5MRE|1|A|U|508
5MRE|1|A|A|509
5MRE|1|A|A|510
5MRE|1|A|G|511

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 7

mL49

Chain D

uL4m

Chain J

uL15m