HL_5MRE_030

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

5MRE|1|A|U|1568, 5MRE|1|A|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_030 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0745

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5MRE|1|A|C|1564
5MRE|1|A|G|1565
5MRE|1|A|A|1566
5MRE|1|A|C|1567
5MRE|1|A|U|1568
5MRE|1|A|C|1569
5MRE|1|A|A|1570
5MRE|1|A|G|1571

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 3

mL41

Chain O

uL22m

Chain Y

bL34m