HL_5MRE_049

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAAACGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_049 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1805

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MRE|1|A|C|2622
5MRE|1|A|A|2623
5MRE|1|A|A|2624
5MRE|1|A|A|2625
5MRE|1|A|C|2626
5MRE|1|A|G|2627
5MRE|1|A|A|2628
5MRE|1|A|G|2629

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain R

bL27m

Chain Z

bL35m